49  Miscellaneous Topics

Table 1: Miscellaneous Topics
Topic Related topics
**** NONMEM file control stream
-1000000000 raw_output_file
1000000000 raw_output_file
-1000000001 raw_output_file
1000000001 raw_output_file
-1000000002 raw_output_file
1000000002 raw_output_file
-1000000003 raw_output_file
1000000003 raw_output_file
-1000000004 raw_output_file
1000000004 raw_output_file
-1000000005 raw_output_file
1000000005 raw_output_file
-1000000006 raw_output_file
1000000006 raw_output_file
-1000000007 raw_output_file
1000000007 raw_output_file
-1000000008 raw_output_file
1000000008 raw_output_file
1.0E+06 $ESTIMATION,$ESTM
INDIVIDUALS
$OMEGA
RECORDS=ID Example
RECORDS=ID Example 2
$SIGMA
160 $INPUT
2000 $DATA
2000000000 raw_output_file
2000000001 raw_output_file
2000000002 raw_output_file
2000000003 raw_output_file
-2ll F_FLAG
MDVRES
-2loglikelihood, -2llikelihood F_FLAG
MDVRES
48 $DES
67000 $INPUT
nmfe utility program
68 Enterhepatic circulation examples
MINIMUM VALUE OF OBJ. FUNCTION
80 $INPUT
a TRANS5
abbreviated_code, abbreviated $ABBREVIATED
Abbreviated code
Control3 example
DOWHILE block
Indicator variables
Partial Derivative Indicators
Verbatim code
Write print
abbreviated_function Abbreviated code
Abbreviated Function
Abbreviated Function Examples
Probability Density Functions
Transit Compartment Examples
User-defined Reserved Function Example
abscissa $SCATTERPLOT
absolute XML_COMPARE
absorption_lag Bind example
Dose event record
$PK
PK
PK_PD_sequential_1 example
PK_PD_sequential_2 example
SS dose event record
additional $PK
PK
additional_dose Absorption lag parameter
ADDL data item
$BIND
$PK
PK
additional_output_file additional_output_files
nmfe utility program
Order_option
raw_output_file
additional_pk_parameter $PK
PK
additive Control3 example
Control4 example
Random models
addl Empirical SS dose event record
addl_actual Empirical SS dose event record
addl_time Empirical SS dose event record
addl_timediff Empirical SS dose event record
advan13 HINIT_,HMIN_,HMAX_ (NM760)
STOP_TIME,ITASK_ (NM75)
advan14 HINIT_,HMIN_,HMAX_ (NM760)
STOP_TIME,ITASK_ (NM75)
advan15 CALLFL
HINIT_,HMIN_,HMAX_ (NM760)
STOP_TIME,ITASK_ (NM75)
advan16 PASTZERO (NM75)
advan17 CALLFL
PASTZERO (NM75)
advan3 PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
advan9 CALLFL
HINIT_,HMIN_,HMAX_ (NM760)
STOP_TIME,ITASK_ (NM75)
AGH additional_output_files
algebraic_expression, algebraic ADVAN9_15
$AES
AES
amount AMT data item
Dose event record
ERROR
PK
SS dose event record
State Vector: A
State Vector Time: TSTATE
ANEAL Aneal
$ANNEAL
CONSTRAINT
aneal Bayes Example 9
anneal, annealing Aneal
$ANNEAL
CONSTRAINT
$ESTIMATION,$ESTM
ANNL NONMEM control stream
area_under_the_curve Moving Area Under the Curve Example
argument_vector_name $ABBREVIATED
array $ABBREVIATED
Abbreviated code
Transit Compartment Examples
array_size nmfe utility program
$SIZES
ascii $TABLE
atol NONMEM error messages
auc Moving Area Under the Curve Example
aucdelay Moving Area Under the Curve Example
auto-correlation, autocorrelation Correlation Across L2 Records
average, raw Data_Average block
Data_average example
ICALL
MIX CONTR: TEMPLT
Mixture model: MIXPT
$OMIT
RAW_ data item
axis $SCATTERPLOT
b TRANS5
band $OMEGA
$SIGMA
band_symmetric $OMEGA
$SIGMA
baseline Examples Using MTIME to Model Periodic D
Exogenous supplementation example
BASE_STEP TOL
basic_pk_parameter $PK
PK
bayes9.exa Aneal
BAYES_EXTRA_REQUEST, BAYES_EXTRA Bayes Example 8
variables in modules
bayesian Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
Bayes Example 2
Bayes Example 3
Bayes Example 4
Bayes Example 5
Bayes Example 6
Bayes Example 6s
Bayes Example 6sb
Bayes Example 7r
Bayes Example 8
Bayes Example 9
BAYES_PHI_STORE additional_output_files
BDLM NONMEM control stream
beolaunch parallel computing
BERNOULLI Probability Density Functions
BERNOULLILOGIT Probability Density Functions
BEST NONMEM control stream
BETA Probability Density Functions
BETABINOMIAL Probability Density Functions
BFIL NONMEM control stream
BFM additional_output_files
NONMEM output files
BGRD NONMEM control stream
bias Superproblem_1 example
BINOMIAL Probability Density Functions
BINOMIALLOGIT Probability Density Functions
bioavailability, bio-availability Bind example
Bioavailability Behavior
Bioavailability fraction parameter
$PK
PK
TDM example
bivariate $ABBREVIATED
BIVARIATE FUNCTION
Correlation Across L2 Records
block_of_abbreviated_code Abbreviated code
Compartment Initialization Block
Compartment Update Block (NM75)
Copying block
Data_Average block
Expectation block
Initialization-Finalization block
PRED_IGNORE_DATA BLOCK (NM75)
Simulation block
block_set_record NONMEM control stream
BLST NONMEM control stream
BMUM NONMEM control stream
bolus_dose Dose event record
SS dose event record
bounds, boundary, boundaries INFERENTIAL STATISTICS
INITIAL ESTIMATE (INITIAL EST)
Interoccasion_variability example
MONITORING OF SEARCH
$THETA
BQL NPD,NPDE,NPDE_MODE,DV_LOQ,CDF_
YLO example
calendar_date DATE data item
calling_protocol_phrase $AESINITIAL
CALL data item
CALLFL
Calling protocol phrase
$ERROR
$PK
case Abbreviated code
$INPUT
nmfe utility program
variables in modules
Verbatim code
categorical Bayes Example 10
Bayes Example 10l
Data_average example
CATEGORICAL Probability Density Functions
CATEGORICALLOGIT Probability Density Functions
category $LEVEL
ccontr CELS
NONMEM error messages
CCONTR:_F, G, H CCONTR
CCONTR: F,G,H
CCONTR:_Y, DATA, N1, N2, DIM CCONTR
CCONTR:_Y_DATA_N1_N2_DIM CCONTR: Y,DATA,N1,N2,DIM
ccv Multiple_dose example
Phenobarb example
Random models
cdf Probability Density Functions
CDLM NONMEM control stream
cels CCONTR
NONMEM error messages
central_to_peripheral_rate ADVAN11
ADVAN12
ADVAN3
ADVAN4
CFIL NONMEM control stream
characters $INPUT
checkmu MU_Model
CHFL NONMEM control stream
chi-square MINIMUM VALUE OF OBJ. FUNCTION
CHISQUARE Probability Density Functions
CHN NONMEM control stream
cholesky CHOL
cid $LEVEL
circad.csv Examples Using MTIME to Model Periodic D
circadian Examples Using MTIME to Model Periodic D
Classical $ESTIMATION record options
clockseed RANDMT,RANDMTU
$SIMULATION
clock_time TIME data item
close FILES
CLT additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
cnpe COMACT,COMSAV
Displayed PRED-Defined Items
$NONPARAMETRIC
Nonparametric Density: DEN_,CDEN_
Nonparametric example
cntid additional_output_files
CNV additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
COI additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
$RCOV,$RCOVI
colon II data item
TIME data item
comact $TABLE
combined_additive_and_ccv Exogenous supplementation example
Random models
comma $DATA
$COMMANDS parallel computing
comment_record $DATA
commitqq FLU
common NONMEM modules
commons Finalization example ($PRED and $INFN)
compartment CMT PCMT data item
Default compartment
MODEL
compartment_amount $AES
$AESINITIAL
$DES
$ERROR
ERROR
Initial Steady State example
PK
State Vector: A
State Vector Time: TSTATE
compartment_initialization ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Compartment Initialization: A_0
Compartment Initialization: A_0FLG
Compartment Initialization Block
Initial Steady State example
Initial Steady State: I_SS,ISSMOD
MODEL
$PK
PK
compartment_number $PK
compartment_scale $PK
PK
Scaling parameter
compartment_update Compartment Update Block (NM75)
computername.exe parallel computing
concomitant $BIND
$INPUT
$PK
conditional_contribution CCONTR
CELS
conditional_estimate HESSIAN
conditional_estimation_method $ESTIMATION,$ESTM
GETETA
conditional_statement Abbreviated code
Compartment Initialization Block
Data_Average block
Expectation block
Indicator variables
Initialization-Finalization block
Simulation block
conditional_value Displayed PRED-Defined Items
confidence_interval INFERENTIAL STATISTICS
constant $ABBREVIATED
constant_coefficient_of_variation Multiple_dose example
Phenobarb example
Random models
constraint, constrained INITIAL ESTIMATE (INITIAL EST)
Interoccasion_variability example
MONITORING OF SEARCH
$OMEGA
$SIGMA
$THETA
constraint, constraint Aneal
$ANNEAL
CONSTRAINT
continuation Abbreviated code
CONT data item
$INPUT
nmfe utility program
contr CCONTR
ELS
$MIX
MIX
CONTR:_F_G_H CONTR: F,G,H
contribution CCONTR
CELS
CONTR
CRIT
HESSIAN
MULT
SPTWO
CONTR:_III_DIM CONTR: III,DIM
$CONTROL parallel computing
control5 Finedata example
Infn_interpolation example 1
Infn_interpolation example 2
control_stream NONMEM control stream
control_stream.log parallel computing
CONTR:_Y_DATA_NOBS CONTR: Y DATA NOBS
copying_block Copying block
copying_pass COMACT,COMSAV
COM COMACT COMSAV COMRES
COR additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
core parallel computing
correlation BIVARIATE FUNCTION
CORRELATION MATRIX OF ESTIMATE
$COVARIANCE,$COVR
INFERENTIAL STATISTICS
correlation_matrix FINAL PARAMETER ESTIMATE
correlation_matrix_of_estimate CORRELATION MATRIX OF ESTIMATE
Order_option
SUPP
cosine, sine Abbreviated code
COV additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
$RCOV,$RCOVI
covariance additional_output_files
CORRELATION MATRIX OF ESTIMATE
COVARIANCE MATRIX OF ESTIMATE
$OMEGA
Order_option
raw_output_file
Recursive PRED Indicator
$SIGMA
Variance-covariance
covariance_matrix FINAL PARAMETER ESTIMATE
covariance_matrix_of_estimate COVARIANCE MATRIX OF ESTIMATE
Order_option
SUPP
covariance_record NONMEM control stream
covariance_step parallel computing
NONMEM steps
covariate Interoccasion_variability example
Simulation_2 example
Simulation_3 example
COVR NONMEM control stream
COV_STEP TOL
COVT NONMEM control stream
cp Control5 example
Indicator variables
$INPUT
PK_PD_simultaneous_1 example
CPAR NONMEM control stream
cpe Displayed PRED-Defined Items
$ESTIMATION,$ESTM
$NONPARAMETRIC
CPU additional_output_files
NONMEM output files
cpu parallel computing
#CPUT NONMEM output files
crit CELS
cross-product_gradient $COVARIANCE,$COVR
ctrl SIGNAL
ctrl, ctrl-j, ctrl-k, ctlr-e parallel computing
ctrl, ctrl-j, ctrl-k, ctlr-e, ctrl-t nmfe utility program
cumulative Probability Density Functions
cumulative_density Nonparametric Density: DEN_,CDEN_
cumulative_distribution NPD,NPDE,NPDE_MODE,DV_LOQ,CDF_
PHI
dadt Examples Using MTIME to Model Periodic D
DATA NONMEM file control stream
NONMEM control stream
data DATA_ITEMS
DATA_RECORDS
DATA_SET
Ignore_accept example
data~average Data_Average block
Data_average example
$ERROR
ICALL
MIX CONTR: TEMPLT
Mixture model: MIXPT
$OMIT
$PK
$PRED
RAW_ data item
data_item $BIND
DATA_ITEMS
DATA_RECORDS
DATA_SET
$INPUT
$LEVEL
OBSERVATION RECORDS
data_record $INPUT
NONMEM control stream
NONMEM file control stream
data_recs, data_records DATA_ITEMS
DATA_RECORDS
DATA_SET
OBSERVATION RECORDS
data_set DATA_SET
days $DATA
day-time $DATA
dde ADVAN9_15
DDEXPAND
ddexpand ADVAN9_15
declare DOWHILE block
declare, declared $ABBREVIATED
Abbreviated code
Infn_interpolation example 2
Transit Compartment Examples
default_compartment Default compartment
default_compartment_for_doses CMT PCMT data item
Default compartment
default_compartment_for_observations CMT PCMT data item
Default compartment
defaults.pnm parallel computing
degrees~of~freedom $OMEGAP,$OMEGAPD
$TTDF (NM75)
delaydata Moving Area Under the Curve Example
Delay_differential_equation ADVAN9_15
DDEXPAND
delimiter $DATA
TABLE_COMPARE
TABLE_QUANT
TABLE_RESAMPLE
XML_COMPARE
delimiter_record NONMEM file control stream
density Nonparametric Density: DEN_,CDEN_
Probability Density Functions
density_cdf Probability Density Functions
densitycdf Probability Density Functions
density_rng Probability Density Functions
densityrng Probability Density Functions
dependent_variable, dv_data_item DV and MDV data items
deriv2 $ESTIMATION,$ESTM
derivative ERROR
PRED
des Examples Using MTIME to Model Periodic D
des_der $DES
DESIGN additional_output_files
design $DESIGN (NM75)
dextromethorphan Plasma urine example
DFLT NONMEM control stream
DIAG NONMEM control stream
diag, odiag $OMEGA
$SIGMA
dichotomous_response Bayes Example 10
Bayes Example 10l
Logistic regression example
differential_equation, differential ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Control7 example
$DES
DES
INTERPOLATION IN $DES
Michaelis_Menten example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_4 example
SS6 SS9
differential_equations SDE
Stochastic Differential Equation examples
digits $DATA
dimension $ABBREVIATED
direction MONITORING OF SEARCH
$DIRECTORIES parallel computing
DIRICHLET Probability Density Functions
discontinuous Examples Using MTIME to Model Periodic D
discontinuous, discontinuity Abbreviated code
$DES
Enterhepatic circulation examples
Examples Using MTIME to Model Periodic D
MINIMUM VALUE OF OBJ. FUNCTION
Model Time examples
MTIME MNEXT MPAST MNOW MTDIFF
dispersion~factor $OMEGAP,$OMEGAPD
displayed_values $DES
Displayed PRED-Defined Items
$SCATTERPLOT
Simulation_1 example
Simulation_2 example
$TABLE
distributed_computing $COVARIANCE,$COVR
$ESTIMATION,$ESTM
FOCE_PARALLEL example
nmfe utility program
parallel computing
distribution NPD,NPDE,NPDE_MODE,DV_LOQ,CDF_
PHI
Probability Density Functions
dll parallel computing
dose AMT data item
Dose event record
Multiple_dose example
dose_amount AMT data item
Dose event record
SS dose event record
dose_compartment CMT PCMT data item
Default compartment
Dose event record
Duration parameter
Rate parameter
dose_event Dose event record
dose_event, dose EVID data item
dose_rate Duration parameter
RATE data item
Rate parameter
DOUBLEEXPONENTIAL Probability Density Functions
double-precision SUBROUTINE
$SUBROUTINES
drive_letter parallel computing
dropped_record $DATA
Ignore_accept example
drug_effect, effect $ERROR
Indicator variables
PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
DTD additional_output_files
TABLE_TO_XML
dtd TABLE_TO_XML
dummy CCONTR
CONTR
CRIT
INFN
$MIX
MIX
PRIOR
SPTWO
Stubs
duplicate_system Moving Area Under the Curve Example
duration_of_infusion Dose event record
Multiple_dose example
$PK
PK
RATE data item
dynamic_allocation nmfe utility program
$SIZES
ebcdic $TABLE
ebvshrink additional_output_files
SHRINKAGE
ebvshrinksd SHRINKAGE
ebvshrinkvr SHRINKAGE
effect, drug_effect $ERROR
Indicator variables
effects NONMEM model
efficacy Moving Area Under the Curve Example
EHC, enterohepatic_recycling Enterhepatic circulation examples
Model Time examples
eigenvalues ADVAN5 ADVAN7
$COVARIANCE,$COVR
INFERENTIAL STATISTICS
els CONTR
NONMEM error messages
SPTWO
emax Enterhepatic circulation examples
Indicator variables
PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
empirical ADDL data item
Empirical SS dose event record
SS dose event record
empirical_bayes_variance additional_output_files
empirical_ss ADDL data item
SS dose event record
end_of_data FINISH
endogenous ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
$DES
Exogenous supplementation example
Initial Steady State example
Initial Steady State: I_SS,ISSMOD
SS dose event record
eps-eta_interaction $ESTIMATION,$ESTM
epshrink SHRINKAGE
epsilon ERROR
PRED
epsshrinksd SHRINKAGE
epsshrinkvr SHRINKAGE
equations DES
equilibrium ADVAN9_15
$AES
$AESINITIAL
MODEL
error-defined-items Displayed PRED-Defined Items
$ERROR
PRED-Defined Variables
Simulation_1 example
Simulation_2 example
Simulation_3 example
error_in_log_y CALLFL
Calling protocol phrase
ERROR
error_return_code Estim Covar Error Codes
estimation $ESTIMATION record options
$PRIOR
estimation, estm $ESTIMATION record options
estimation_record additional_output_files
$CHAIN
NONMEM control stream
Order_option
raw_output_file
estimation_record_options $ESTIMATION,$ESTM
estimation_step $ESTIMATION,$ESTM
parallel computing
NONMEM steps
Estim_Covar_Error_Codes Estim Covar Error Codes
ESTM NONMEM control stream
EST_STEP TOL
ETA NONMEM control stream
etabar ETABAR
eta-derivative Partial Derivative Indicators
ETAS Model Specification file
_ETAS Model Specification file
etas Nonparametric Density: DEN_,CDEN_
etashrink SHRINKAGE
etashrinksd SHRINKAGE
etashrinkvr SHRINKAGE
etas_shrinkage $ESTIMATION,$ESTM
ETS $ESTIMATION,$ESTM
evaluations $ESTIMATION,$ESTM
MONITORING OF SEARCH
event_identification_data_item, evid EVID data item
event_record $BIND
CONT data item
Dose Time Non-Event: DOSTIM
$LEVEL
event_time CALLFL
Calling protocol phrase
Dose event record
Dose Time Non-Event: DOSTIM
SS dose event record
TIME data item
example10.ctl Bayes Example 10
example10l.ctl Bayes Example 10l
example1B.ctl Bayes Example 1B
example1.ctl Bayes Example 1
example3.ctl Bayes Example 3
example4.ctl Bayes Example 4
example5.ctl Bayes Example 5
example6.ctl Bayes Example 6
example6sb.ctl Bayes Example 6sb
example6s.ctl Bayes Example 6s
example7r.ctl Bayes Example 7r
example8.ctl Bayes Example 8
example9.ctl Aneal
Bayes Example 9
$EXCLUDE parallel computing
exclusion $TABLE
executable_file $SUBROUTINES
exit Simulation block
exit_code, error_return_code Abbreviated code
$ESTIMATION,$ESTM
Interoccasion_variability example
PRED Exit Code
$THETA
exit_status, status, regular nmfe utility program
exogenous ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
$DES
Exogenous supplementation example
Initial Steady State example
Initial Steady State: I_SS,ISSMOD
SS dose event record
expectation $ERROR
Expectation block
Expectation example
MRG_ data item
$PK
$PRED
explicit $ABBREVIATED
ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Copying block
$MODEL
$PK
EXPMODNORMAL Probability Density Functions
exponential Abbreviated code
EXPONENTIAL Probability Density Functions
exponential Random models
exportfs parallel computing
EXT additional_output_files
raw_output_file
ext raw_output_file
extra Model Specification file
extra_evid EVID data item
extra_msf_file” Model Specification file
factor $DATA
factorial GAMLN
family $SCATTERPLOT
FCON NM-TRAN output files
fcon NONMEM control stream
FDATA NM-TRAN output files
FFIL NONMEM control stream
fflag F_FLAG
MDVRES
FGH additional_output_files
field_delimiter $DATA
FILE NONMEM control stream
file FILES
Write print
file_control_stream, file_stream NONMEM file control stream
filename $CHAIN
$ETAS,$PHIS
Write print
file_passing_interface parallel computing
file_passing_interface, file_transfer, transfer nmfe utility program
file_record NONMEM control stream
NONMEM file control stream
final FINAL PARAMETER ESTIMATE
final_estimate Finalization example ($PRED and $INFN)
INFN
Objective Function Value
Parameter Values: Initial and Final
Standard Errors
finalization Finalization example ($PRED and $INFN)
INFN
INFN-defined Variables
Initialization-Finalization block
NWPRI examples
PASS
$PRED
PRED-Defined Variables
PRED,RES,WRES
finalization_step NONMEM steps
final_parameter_estimate FINAL PARAMETER ESTIMATE
SUPP
$THETAR
FIND NONMEM control stream
find_record NONMEM control stream
finish_record, finish $DATA
FINISH
first_derivative Partial Derivative Indicators
first_order_absorption ADVAN12
ADVAN2
ADVAN4
first_order_conditional_estimation_method $ESTIMATION,$ESTM
first_order_method $ESTIMATION,$ESTM
fixed_effects INITIAL ESTIMATE (INITIAL EST)
NONMEM model
fizesr $ABBREVIATED
flexible_infusion_rate Model Time examples
FLIB NM-TRAN output files
SUBROUTINE
flush FLU
fnleta NONMEM steps
fnlmod $ESTIMATION,$ESTM
NONMEM steps
foce FOCE_PARALLEL example
foce_parallel FOCE_PARALLEL example
parallel computing
fo, foce $ESTIMATION,$ESTM
FOCE_PARALLEL example
FORIG $ABBREVIATED
NM-TRAN output files
FORM NONMEM control stream
format Write print
format_record $FORMAT
NONMEM control stream
format_specification, format $DATA
$ETAS,$PHIS
FINISH
Multiple_dose example
$RCOV,$RCOVI
FORTRAN Abbreviated code
Verbatim code
Write print
fpi nmfe utility program
parallel computing
fpilinux8.pnm parallel computing
fpilinux_onecomputer.pnm parallel computing
fpilinux_twocomputers.pnm parallel computing
fpiwini8.pnm parallel computing
fpiwin_onecomputer.pnm parallel computing
fpiwin_twocomputers.pnm parallel computing
fraction Output fraction parameter
$PK
PK
FRECHET Probability Density Functions
FREPL $ABBREVIATED
NM-TRAN output files
FREPORT ADVAN (general)
NM-TRAN output files
SUBROUTINE
$SUBROUTINES
FRML NONMEM control stream
FRMR NONMEM control stream
fsd $INPUT
nmfe utility program
FSIZES NM-TRAN output files
fsizes $ABBREVIATED
FSIZES nmfe utility program
FSIZESR nmfe utility program
FSTREAM NM-TRAN output files
FSUBS NM-TRAN output files
SUBROUTINE
$SUBROUTINES
fsubs $ABBREVIATED
Partial Derivative Indicators
fsubs, fsubs_mu nmfe utility program
full $OMEGA
$SIGMA
function $ABBREVIATED
Abbreviated code
Abbreviated Function
Abbreviated Function Examples
Probability Density Functions
Transit Compartment Examples
User-defined Reserved Function Example
function_evaluations $ESTIMATION,$ESTM
MONITORING OF SEARCH
functions Stubs
funcx9.ctl BIVARIATE FUNCTION
FWORK NM-TRAN output files
gamma GAMLN
GAMMA Probability Density Functions
$GENERAL parallel computing
general parallel computing
general_linear_kinetics_model ADVAN5 ADVAN7
general_nonlinear_kinetics_model ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
generated_subroutine SUBROUTINE
gibbs $ESTIMATION,$ESTM
MU_Model
global $ABBREVIATED
Abbreviated code
$AES
$AESINITIAL
$DES
$ERROR
Initialization-Finalization block
$PK
$PRED
glucose Initial Steady State example
Goal_Function raw_output_file
goodness_of_fit CORRELATION MATRIX OF ESTIMATE
goodness~of~fit Data_average example
Expectation example
gradient additional_output_files
MONITORING OF SEARCH
GRD additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
GRID NONMEM control stream
guide USERS GUIDE
GUMBEL Probability Density Functions
header $TABLE
hessian $COVARIANCE,$COVR
HESSIAN
hill_parameter Enterhepatic circulation examples
Initial Steady State example
hillss.ctl Enterhepatic circulation examples
hours $DATA
hybrid_estimation_method $ESTIMATION,$ESTM
hydrochlorothiazide Interoccasion_variability example
hyperbolic_model PK_PD_simultaneous_4 example
HYPERGEOMETRIC Probability Density Functions
hypothesis_test INFERENTIAL STATISTICS
MINIMUM VALUE OF OBJ. FUNCTION
icall ICALL
NONMEM steps
icu Indicator variables
identification, id_data_item ID .ID. and L1 data items
idr Examples Using MTIME to Model Periodic D
$IDRANGES parallel computing
idr_circexa.ctl Examples Using MTIME to Model Periodic D
ii $DATA
im_dose, iv_dose Multiple_dose example
IMP additional_output_files
implicit $ABBREVIATED
ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Copying block
$MODEL
$PK
importance, importance_sampling Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
$ESTIMATION,$ESTM
MU_Model
$INCLUDE parallel computing
index parallel computing
index_record NONMEM control stream
indicator_variables Indicator variables
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
indirect Examples Using MTIME to Model Periodic D
indirect_dynamics PK_PD_simultaneous_4 example
individual_contribution Objective Function Value Individual
Objective Function Value Individual example
individual_data Control3 example
RECORDS=ID Example 2
individual_prediction Displayed PRED-Defined Items
individual_record CCONTR: Y,DATA,N1,N2,DIM
CONTR: F,G,H
CONTR: III,DIM
CONTR: Y DATA NOBS
MIX: DATA
individual_residual Displayed PRED-Defined Items
Parameters OMEGA SIGMA: Current
individuals, individual_record ID .ID. and L1 data items
INDIVIDUALS
SIMETA
Simulation_2 example
individual-specific, individual-eta $ESTIMATION,$ESTM
individual_weighted-residual Displayed PRED-Defined Items
Parameters OMEGA SIGMA: Current
INDX NONMEM control stream
INE_STEP TOL
inferential_statistics INFERENTIAL STATISTICS
infn-defined-items INFN-defined Variables
informative~form~of~$OMEGA $OMEGAP,$OMEGAPD
informative~record~name $OMEGAP,$OMEGAPD
infusion_dose Dose event record
Duration parameter
Multiple_dose example
RATE data item
Rate parameter
SS dose event record
infusion_rate Dose event record
Duration parameter
Exogenous supplementation example
$PK
PK
RATE data item
Rate parameter
SS dose event record
initial $AESINITIAL
initial_condition ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Initial Steady State example
Initial Steady State: I_SS,ISSMOD
MODEL
PK
PK_PD_simultaneous_4 example
SS dose event record
initial_estimate INFN
Parameter Values: Initial and Final
INITIAL ESTIMATE (INITIAL EST)
initial_estimate, initial_parameter_estimate Variance-covariance
initial_estimate_step NONMEM steps
initial, initial_estimate, initial_parameter_estimate INITIAL ESTIMATE (INITIAL EST)
MONITORING OF SEARCH
$OMEGA
$SIGMA
$THETA
$THETAI
initialization ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Compartment Initialization: A_0
Compartment Initialization: A_0FLG
Compartment Initialization Block
INFN
INFN-defined Variables
Infn_interpolation example 1
Infn_interpolation example 2
Initialization-Finalization block
Initial Steady State example
Initial Steady State: I_SS,ISSMOD
MODEL
PASS
$PK
PK
$PRED
PRED-Defined Variables
initial_steady_state MODEL
PK
PREDPP modules
initial_value Displayed PRED-Defined Items
initiating_dose_record Bind example
TDM example
initl NONMEM steps
input_model_specification_record NONMEM file control stream
input_vector_name $ABBREVIATED
installation_routine FLU
insulin Initial Steady State example
integer $ABBREVIATED
integer, integer_expression Abbreviated code
INTER $ESTIMATION,$ESTM
MONITORING OF SEARCH
raw_output_file
inter Model Specification file
interdose_interval, interval II data item
inter-individual, interindividual Intra and inter-individual
$LEVEL
Random models
intermediate_output MONITORING OF SEARCH
interoccasion_variability Interoccasion_variability example
interpolation INFN
Infn_interpolation example 2
interpolation, interpolate Finedata example
Infn_interpolation example 1
Infn_interpolation example 2
INTERPOLATION IN $DES
inter-record Abbreviated code
interval Examples Using MTIME to Model Periodic D
intra-individual, intraindividual $ERROR
Intra and inter-individual
$LEVEL
Random models
intranet, internet parallel computing
intra-record Abbreviated code
INVCHISQUARE Probability Density Functions
inverse $COVARIANCE,$COVR
INFERENTIAL STATISTICS
INVGAMMA Probability Density Functions
iov Interoccasion_variability example
IP_address parallel computing
IPH additional_output_files
NONMEM output files
ipred, ires, iwres Displayed PRED-Defined Items
Parameters OMEGA SIGMA: Current
Phenobarb example
IPROB raw_output_file
iprob TOL
IREP raw_output_file
istate NONMEM error messages
ITEM NONMEM control stream
item $BIND
DATA_ITEMS
DATA_RECORDS
DATA_SET
$INPUT
$LEVEL
item_record NONMEM control stream
iteration additional_output_files
$ESTIMATION,$ESTM
raw_output_file
MONITORING OF SEARCH
iteration_number Aneal
iter_no Aneal
iter_report Bayes Example 8
variables in modules
ITER_REPORT, BAYES_EXTRA_REQUEST, BAYES_EXTRA Abbreviated code
kernel $ESTIMATION,$ESTM
l1_data_item, l1_record CONTR
ID .ID. and L1 data items
INDIVIDUALS
SIMETA
SPTWO
l2_data_item, l2_record CCONTR
L2 data item
SIMEPS
label Abbreviated code
DATA_ITEMS
Displayed PRED-Defined Items
$INPUT
LBLR
label_record NONMEM control stream
label_replace LBLR
label_substitution, substitution $ABBREVIATED
LABL NONMEM control stream
lag, lag_time, lagged_dose $BIND
Bind example
Dose event record
$PK
PK
PK_PD_sequential_1 example
PK_PD_sequential_2 example
SS dose event record
launch parallel computing
LBW1 NONMEM control stream
LD_LIBRARY_PATH parallel computing
LEPS NONMEM control stream
LETA NONMEM control stream
level1, level_one CONTR
ID .ID. and L1 data items
SIMETA
SPTWO
level2, level_two CCONTR
CCONTR: F,G,H
CONTR: III,DIM
L2 data item
SIMEPS
level2, level_two, levell1, level-one CCONTR: Y,DATA,N1,N2,DIM
library_subroutine SUBROUTINE
LICENSE, LICFILE, NONMEM.LIC nmfe utility program
parallel computing
licfile parallel computing
likelihood Bayes Example 10
Bayes Example 10l
CONTR
$ESTIMATION,$ESTM
MINIMUM VALUE OF OBJ. FUNCTION
SPTWO
Stubs
limit_of_quantification, quantification NPD,NPDE,NPDE_MODE,DV_LOQ,CDF_
YLO example
linear_kinetics_model ADVAN5 ADVAN7
link.lnk nmfe utility program
linux parallel computing
list1, list2 $SCATTERPLOT
list1, list2, list3 $TABLE
literal Verbatim code
loaded $ETAS,$PHIS
load_module $SUBROUTINES
local Abbreviated code
$AESINITIAL
Initialization-Finalization block
logarithm Abbreviated code
LOGISTIC Probability Density Functions
logistic_regression, logit Bayes Example 10
Bayes Example 10l
Logistic regression example
LOGNORMAL Probability Density Functions
loop DOWHILE block
LOQ NPD,NPDE,NPDE_MODE,DV_LOQ,CDF_
YLO example
loss PK_PD_simultaneous_4 example
lower_bound_record NONMEM control stream
lower_case Abbreviated code
$INPUT
nmfe utility program
variables in modules
Verbatim code
lower-triangular MONITORING OF SEARCH
low, lower, lower_bound INITIAL ESTIMATE (INITIAL EST)
MONITORING OF SEARCH
$THETA
LOWR NONMEM control stream
lsoda NONMEM error messages
LTHT NONMEM control stream
manager parallel computing
marginal Expectation block
Expectation example
MRG_ data item
marginal_cumulative_value Nonparametric Density: DEN_,CDEN_
matrix COVARIANCE MATRIX OF ESTIMATE
$OMEGA
$SIGMA
maxdrec nmfe utility program
maxevals $NONPARAMETRIC
MAXRECID nmfe utility program
MCMC additional_output_files
mcmc Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
Bayes Example 2
$ESTIMATION,$ESTM
message_passing_interface nmfe utility program
parallel computing
metabolite Plasma urine example
#METH additional_output_files
METH additional_output_files
meth $DES
#METH NONMEM output files
METH NONMEM output files
#METH raw_output_file
METH raw_output_file
method $NONPARAMETRIC
Metropolis-Hasting $ESTIMATION,$ESTM
MU_Model
michaelis_menten_elimination ADVAN10
Michaelis_Menten example
micro-constant $PK
PK
minimization $ESTIMATION,$ESTM
MONITORING OF SEARCH
$THETA
minimum, minimum_value_of_objective_function MINIMUM VALUE OF OBJ. FUNCTION
MONITORING OF SEARCH
minimum_value_of_objective_function SUPP
MISES Probability Density Functions
missing_dependent_variable DV and MDV data items
missing_independent_variable Finedata example
Infn_interpolation example 1
Infn_interpolation example 2
miter $DES
MIX_CONTR:_TEMPLT MIX CONTR: TEMPLT
MIX_CONTR:_THETA CCONTR
MIX CONTR: THETA
MIX:_DATA MIX: DATA
mixing_dimension MIX
MIXNUM_MIXEST_MIXP
mixture_model:_MIXNUM_MIXEST Mixture model: MIXNUM,MIXEST
Mixture_model:_MIXP Mixture model: MIXP
Mixture_model:_MIXPT Mixture model: MIXPT
mixture_model, mixture MIX
MIXNUM_MIXEST_MIXP
Mixture_model example
Mixture model: MIXNUM,MIXEST
PRED_RES_WRES
mixture_model, mixture, mixture_probabilities Mixture model: MIXP
Mixture model: MIXPT
mixture_model, mixture_probabilities $MIX
mode parallel computing
modeled_as_log PK
$THETAI
$THETAR
TRANS (subroutine)
modeled_duration Dose event record
Duration parameter
Multiple_dose example
$PK
PK
RATE data item
SS dose event record
modeled_rate Dose event record
Exogenous supplementation example
$PK
PK
RATE data item
Rate parameter
SS dose event record
model_estimate Mixture model: MIXNUM,MIXEST
Mixture model: MIXP
model_specification_file $NONPARAMETRIC
model_specification_file, msf $ESTIMATION,$ESTM
Model Specification file
$MSFI
Multiple_dose example
Nonparametric example
model_specification_record NONMEM file control stream
model_subroutine $MODEL
MODEL
model_time, model_event_time Calling protocol phrase
Enterhepatic circulation examples
Examples Using MTIME to Model Periodic D
MINIMUM VALUE OF OBJ. FUNCTION
Model Event Time: MNOW,MPAST,MNEXT
Model Event Time: MTDIFF
Model Event Time: MTIME
Model Time examples
MTIME MNEXT MPAST MNOW MTDIFF
$PK
modules NONMEM modules
PREDPP modules
variables in modules
monitoring_of_search MONITORING OF SEARCH
SUPP
monte-carlo additional_output_files
Bayes Example 1
Bayes Example 1B
monte_carlo $ESTIMATION,$ESTM
monte-carlo PRED,RES,WRES
$SCATTERPLOT
$TABLE
moving_average Moving Area Under the Curve Example
mpd parallel computing
mpdallexit parallel computing
Mpdboot parallel computing
mpi nmfe utility program
parallel computing
mpich2 nmfe utility program
parallel computing
Mpiexec parallel computing
mpilinux parallel computing
mpilinux8.pnm parallel computing
mpilinux_onecomputer.pnm parallel computing
mpilinux_twocomputers.pnm parallel computing
mpiwin parallel computing
MPI_WING parallel computing
MPI_WINI parallel computing
mpiwini8.pnm parallel computing
mpiwin_onecomputer.pnm parallel computing
mpiwin_twocomputers.pnm parallel computing
msf $NONPARAMETRIC
MSFI NONMEM file control stream
msf, model_specification_file $ESTIMATION,$ESTM
Model Specification file
$MSFI
Nonparametric example
MSFO NONMEM file control stream
msfo_record, msfi_record NONMEM file control stream
MSFV NONMEM control stream
MSLEEP parallel computing
mtime Abbreviated code
mtimess.ctl Enterhepatic circulation examples
MTOUCH parallel computing
mufirstrec $ESTIMATION,$ESTM
multi_mode parallel computing
MULTINOMIAL Probability Density Functions
multiple_core parallel computing
multiple_dose Multiple_dose example
Phenobarb example
multiple-problem Problem Iteration Counters
SUBROUTINE
Superproblem_1 example
mu_model Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
Bayes Example 2
Bayes Example 3
Bayes Example 4
Bayes Example 5
Bayes Example 6
Bayes Example 6s
Bayes Example 6sb
Bayes Example 7r
Bayes Example 8
Bayes Example 9
MU_Model
MUMODEL2 nmfe utility program
mu, mu_model additional_output_files
Indicator variables
nmfe utility program
mu_referencing MU_Model
mu_warning MU_Model
myfuncs User-defined Reserved Function Example
mymin, mymax User-defined Reserved Function Example
$NAMES parallel computing
ncontr CCONTR
CELS
CONTR
SPTWO
NEGBINOMIAL Probability Density Functions
NEGBINOMIAL2 Probability Density Functions
NEGBINOMIAL2LOG Probability Density Functions
nested DOWHILE block
$LEVEL
netilmicin Multiple_dose example
network parallel computing
network_drive parallel computing
nfs parallel computing
nindr_indr1_indr2 NINDR INDR1 INDR2
nmbayes additional_output_files
raw_output_file
nmfe, nmfe.bat additional_output_files
ADVAN (general)
$COVARIANCE,$COVR
$ESTIMATION,$ESTM
nmfe utility program
NONMEM output files
NONMEM program
parallel computing
raw_output_file
nmlink7 nmfe utility program
nmprd3 Copying block
nmprd4 Copying block
$ERROR
Initialization-Finalization block
NM_STEP TOL
nmtran_library, nm-tran_library SUBROUTINE
nm-tran, nmtran NM-TRAN output files
NONMEM program
nocheckmu MU_Model
node parallel computing
nodes parallel computing
nonequilibrium ADVAN9_15
$AES
$AESINITIAL
nonevent_dose_time Bind example
Dose Time Non-Event: DOSTIM
TDM example
nonlinear_kinetics_model ADVAN10
ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Michaelis_Menten example
nonmem NONMEM output files
nonmem_common NONMEM modules
nonmem.commons Finalization example ($PRED and $INFN)
nonmem_control_records NONMEM control stream
nonmem.exe parallel computing
nonmem_model NONMEM model
NONMEM program
nonmem_modules NONMEM modules
variables in modules
nonmem, nonlinear_mixed_effects_model NONMEM model
NONMEM program
NONMEM_problem INFN
PASS
nonmem_reserved Abbreviated code
Additional_Record_Counters
DV and MDV data items
User-defined Reserved Function Example
variables in modules
nonmem_reserved_general Abbreviated code
Additional_Record_Counters
DV and MDV data items
variables in modules
nonmem_user_guide USERS GUIDE
NONP NONMEM control stream
nonpar NONMEM steps
Nonparametric_density:_DEN__CDEN_ Nonparametric Density: DEN_,CDEN_
nonparametric_record NONMEM control stream
Nonparametric Density: DEN_,CDEN_
Nonparametric example
nonparametric_step NONMEM steps
NONP_STEP TOL
non_random_variable Abbreviated code
NORMAL Probability Density Functions
np4f NONMEM steps
nparametr Order_option
MONITORING OF SEARCH
NPD additional_output_files
NPE additional_output_files
NPI additional_output_files
NPL additional_output_files
null_sss_routine SS option
numder additional_output_files
obj NONMEM error messages
objective_function CCONTR
CELS
CONTR
CRIT
ELS
$ESTIMATION,$ESTM
MULT
NCONTR
NWPRI
OBJ
Objective Function Value
Objective Function Value Individual
Objective Function Value Individual example
parallel computing
PRIOR
SPTWO
TNPRI
MINIMUM VALUE OF OBJ. FUNCTION
MONITORING OF SEARCH
Objective_function_value_individual Objective Function Value Individual
#OBJN NONMEM output files
OBJN NONMEM output files
objquick $ESTIMATION,$ESTM
#OBJS NONMEM output files
OBJS NONMEM output files
#OBJT NONMEM output files
OBJT NONMEM output files
#OBJT raw_output_file
OBJT raw_output_file
#OBJV NONMEM output files
OBJV NONMEM output files
observation_compartment CMT PCMT data item
Default compartment
observation_event, observation EVID data item
observed_value, observation DV and MDV data items
INDIVIDUALS
obs_recs, observation_record, observations OBSERVATION RECORDS
occasion Interoccasion_variability example
odd-type_data ERROR
$ESTIMATION,$ESTM
Logistic regression example
PRED
PRED_RES_WRES
$SIMULATION
off, on CMT PCMT data item
$MODEL
MODEL
OFVTYPE additional_output_files
OLEV NONMEM control stream
olkjdf $ovarf
omega $ANNEAL
OMEGANNL $ANNEAL
CONSTRAINT
OMEGA_STD_PRIORU $ovarf
OMIT NONMEM control stream
omit_record NONMEM control stream
omitted_entry CORRELATION MATRIX OF ESTIMATE
COVARIANCE MATRIX OF ESTIMATE
STANDARD ERROR OF ESTIMATE
one_compartment_linear_model ADVAN1
ADVAN2
one_compartment_model ADVAN10
open FILES
optimal_design $DESIGN (NM75)
ORDEREDLOGISTIC Probability Density Functions
order_option $CHAIN
$ESTIMATION,$ESTM
ordinate $SCATTERPLOT
ORDR NONMEM control stream
other-type_event, other-type EVID data item
output_compartment CMT PCMT data item
$DES
$MODEL
Plasma urine example
output_file additional_output_files
nmfe utility program
parallel computing
output_fraction Output fraction parameter
$PK
PK
output_model_specification_record NONMEM file control stream
output-type CMT PCMT data item
$MODEL
Plasma urine example
overshoot HINIT_,HMIN_,HMAX_ (NM760)
STOP_TIME,ITASK_ (NM75)
overstriking $SCATTERPLOT
pacos $ABBREVIATED
#PARA NONMEM output files
PARA NONMEM output files
parafile.pnm nmfe utility program
parallel FOCE_PARALLEL example
parallel_file nmfe utility program
parallel computing
parallelization $COVARIANCE,$COVR
$ESTIMATION,$ESTM
FOCE_PARALLEL example
nmfe utility program
parallel computing
parameter $PK
PK
TRANS (subroutine)
MONITORING OF SEARCH
Parameter_dimensions Parameter Dimensions
parameter_estimate CORRELATION MATRIX OF ESTIMATE
$COVARIANCE,$COVR
COVARIANCE MATRIX OF ESTIMATE
FINAL PARAMETER ESTIMATE
INFERENTIAL STATISTICS
INITIAL ESTIMATE (INITIAL EST)
MINIMUM VALUE OF OBJ. FUNCTION
$THETAI
$THETAR
paraprint parallel computing
parent Plasma urine example
PARETO Probability Density Functions
PARETO2 Probability Density Functions
parse_num parallel computing
parse_type parallel computing
Partial_Derivative_Indicators Partial Derivative Indicators
pasin $ABBREVIATED
PASS_New_L2_record:_NEWL2 PASS New L2 record: NEWL2
pass_through_the_data Finalization example ($PRED and $INFN)
ICALL
Infn_interpolation example 1
Infn_interpolation example 2
patan $ABBREVIATED
PD $ERROR
PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
pdz $ABBREVIATED
peripheral Three_compartment example
peripheral_to_central_rate ADVAN11
ADVAN12
ADVAN3
ADVAN4
permissions parallel computing
pexp $ABBREVIATED
PFIL NONMEM control stream
pharmacodynamic $ERROR
PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
phe $ABBREVIATED
pheno, phenobarbital Phenobarb example
PHI additional_output_files
$ESTIMATION,$ESTM
$ETAS,$PHIS
NONMEM output files
NONMEM control stream
phi additional_output_files
MU_Model
Objective Function Value Individual
PHM additional_output_files
$ESTIMATION,$ESTM
$ETAS,$PHIS
NONMEM output files
pk-defined-items Displayed PRED-Defined Items
$PK
PRED-Defined Variables
Simulation_1 example
Simulation_2 example
pk_parameter $PK
PK
TRANS (subroutine)
pk_parameter_is_modeled_as_log PK
$THETAI
$THETAR
TRANS (subroutine)
pkpd PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
plasma CMT PCMT data item
Output fraction parameter
Plasma urine example
Scaling parameter
plog $ABBREVIATED
plog10 $ABBREVIATED
png $ABBREVIATED
pnm parallel computing
pnp $ABBREVIATED
points_of_support $NONPARAMETRIC
POISSON Probability Density Functions
POISSONLOG Probability Density Functions
pooled $OMEGA
$SIGMA
population $OMEGA
$SIGMA
population_data Control5 example
Control6 example
Control7 example
ID .ID. and L1 data items
INDIVIDUALS
$MSFI
Population single-Subject Indicator
Population_single-subject_indicator Population single-Subject Indicator
positive, positive_definite HESSIAN
NONMEM error messages
$OMEGA
$SIGMA
Variance-covariance
post_hoc Displayed PRED-Defined Items
$ESTIMATION,$ESTM
posthoc Finalization example ($PRED and $INFN)
post_hoc $TABLE
power_function Random models
PPAR NONMEM control stream
prazosin Interoccasion_variability example
precision CORRELATION MATRIX OF ESTIMATE
$COVARIANCE,$COVR
COVARIANCE MATRIX OF ESTIMATE
STANDARD ERROR OF ESTIMATE
SUBROUTINE
$SUBROUTINES
TABLE_COMPARE
TABLE_QUANT
TABLE_RESAMPLE
XML_COMPARE
precision_of_parameter_estimate INFERENTIAL STATISTICS
pred Recursive PRED Indicator
pred-defined-items Displayed PRED-Defined Items
$PRED
PRED-Defined Variables
Simulation_1 example
Simulation_2 example
pred_exit_code, pred_error_return_code Abbreviated code
$ESTIMATION,$ESTM
Interoccasion_variability example
PRED Exit Code
$THETA
prediction CMT PCMT data item
$ESTIMATION,$ESTM
$PRED
PRED
PRED,RES,WRES
PRED_RES_WRES
prediction_compartment CMT PCMT data item
PRED_IGNORE_DATA, PRED_IGNORE_DATA_TEST Abbreviated code
$DATA
ICALL
INFN
PRED
PRED_IGNORE_DATA BLOCK (NM75)
predpp ADVAN (general)
NONMEM program
predpp_modules PREDPP modules
pre-existing Exogenous supplementation example
preparation Bind example
prior Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
Bayes Example 3
Bayes Example 4
Bayes Example 6
Bayes Example 6s
Bayes Example 6sb
Bayes Example 7r
Bayes Example 8
Bayes Example 9
priorget
$SIMULATION
prior_dose Exogenous supplementation example
prior, prior~information $OMEGAP,$OMEGAPD
PRIOR_Simulation:_Parameters NWPRI
PRIOR
TNPRI
prioru $ESTIMATION,$ESTM
$OLKJDF
$ovarf
$SLKJDF
$svarf
privilege parallel computing
PROB NONMEM control stream
probabilities $MIX
probability Probability Density Functions
probability_density Probability Density Functions
problem additional_output_files
raw_output_file
problem_delimiter NONMEM file control stream
Problem_iteration_counters Problem Iteration Counters
problem_record NONMEM control stream
process parallel computing
proportional Multiple_dose example
Phenobarb example
Random models
proposal Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
proposal_density Bayes Example 1
Bayes Example 10
Bayes Example 10l
Bayes Example 1B
pro-time PK_PD_simultaneous_4 example
protocol $AESINITIAL
CALL data item
CALLFL
Calling protocol phrase
$ERROR
$PK
prres NONMEM steps
PRSIZES NM-TRAN output files
pseudo-assignment $ERROR
$PK
pseudo-normal, pseudo-uniform $SIMULATION
pseudo-statement $ABBREVIATED
$BIND
psexec parallel computing
psqrt $ABBREVIATED
ptan $ABBREVIATED
p_value, p-value ETABAR
pzr $ABBREVIATED
QNT TABLE_QUANT
TABLE_RESAMPLE
qnt TABLE_QUANT
qnt TABLE_RESAMPLE
quantification, limit_of_quantification NPD,NPDE,NPDE_MODE,DV_LOQ,CDF_
YLO example
r COVARIANCE MATRIX OF ESTIMATE
RADAR5 ADVAN9_15
random Probability Density Functions
random_effects NONMEM model
random-inter-individual-variability Intra and inter-individual
random-intra-individual-variability Intra and inter-individual
random_number_generating Probability Density Functions
random_seed $SIMULATION
random_source RANDMT,RANDMTU
RANDOM
SIMEPS
SIMETA
$SIMULATION
random_source_record NONMEM control stream
random_variable Abbreviated code
ranm RANDMT,RANDMTU
rate_constant $PK
PK
rate, r1 Model Time examples
raw-data Data_average example
$OMIT
RAW_ data item
raw_output_file additional_output_files
nmfe utility program
Order_option
raw_output_file
raw, raw~data~average Data_Average block
Data_average example
ICALL
MIX CONTR: TEMPLT
Mixture model: MIXPT
$OMIT
RAW_ data item
RAYLEIGH Probability Density Functions
RCP MONITORING OF SEARCH
real_eigenvalues ADVAN5 ADVAN7
record_length $DATA
recursive Recursive PRED Indicator
recursive, recursion Abbreviated code
$COVARIANCE,$COVR
DOWHILE block
redgreen Abbreviated Function Examples
relative XML_COMPARE
repeated_observation_record EVID data item
repeated_value $THETA
repeated_value, repeat $OMEGA
$SIGMA
repeat, repetition Repetition_1 example
Repetition_2 example
Repetition Variables
RPT_ data item
SIMEPS
SIMETA
replace LBLR
replicate, replication $DATA
REPL_ data item (NM75)
replication Simulation: NREP,IREP
report_file SUPP
res SPTWO
resample TABLE_RESAMPLE
rescaled_canonical_parameters MONITORING OF SEARCH
reserved_label DATA_ITEMS
$INPUT
reserved_position $ABBREVIATED
reserved_variable Abbreviated code
reset-dose_event, reset-dose EVID data item
reset_event, reset EVID data item
Interoccasion_variability example
reset_hessian HESSIAN
residual Data_average example
Expectation example
Intra and inter-individual
PRED,RES,WRES
PRED_RES_WRES
Random models
return_code Estim Covar Error Codes
reweighting MULT
rewind, rewound DATA_SET
RMAT Model Specification file
_RMAT Model Specification file
r_matrix $COVARIANCE,$COVR
COVARIANCE MATRIX OF ESTIMATE
HESSIAN
Variance-covariance
RMT additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
rng Probability Density Functions
rocm31 Data_Average block
root additional_output_files
raw_output_file
rounding_errors_dominating MONITORING OF SEARCH
rsr $COVARIANCE,$COVR
rtol NONMEM error messages
s COVARIANCE MATRIX OF ESTIMATE
S1IT raw_output_file
S1NUM raw_output_file
save_region $ABBREVIATED
COMACT,COMSAV
COM COMACT COMSAV COMRES
Displayed PRED-Defined Items
PRED-Defined Variables
save_variable Displayed PRED-Defined Items
save_variables Copying block
scale $PK
PK
Scaling parameter
SCALEDINVCHISQUARE Probability Density Functions
scaled_transformed_parameter MONITORING OF SEARCH
SCAT NONMEM control stream
scatterplot_record NONMEM control stream
scatterplot_step NONMEM steps
schema TABLE_TO_XML
sco Abbreviated code
sd, Abbreviated code
sde SDE
Stochastic Differential Equation examples
sde10.ctl Stochastic Differential Equation examples
sde2.ctl Stochastic Differential Equation examples
sde3.ctl Stochastic Differential Equation examples
sde4.ctl Stochastic Differential Equation examples
sde5.ctl Stochastic Differential Equation examples
sde6.ctl Stochastic Differential Equation examples
sde7.ctl Stochastic Differential Equation examples
sde8.ctl Stochastic Differential Equation examples
sde9b.ctl SDE
Stochastic Differential Equation examples
sde9.ctl SDE
Stochastic Differential Equation examples
sde.ctl SDE
Stochastic Differential Equation examples
sde_examples SDE
Stochastic Differential Equation examples
sde.f90 Stochastic Differential Equation examples
sdf $INPUT
SE $TABLE
_SE $TABLE
search $ESTIMATION,$ESTM
$MSFI
second_derivative $ABBREVIATED
ERROR
$ESTIMATION,$ESTM
Partial Derivative Indicators
PK
PRED
seed, seed1, seed2 $SIMULATION
segment $TABLE
selection $ABBREVIATED
sequential_pk_pd PK_PD_sequential_1 example
PK_PD_sequential_2 example
sequential_simultaneous_pk_pd PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
SFIL NONMEM control stream
share parallel computing
shift, diagonal_shift $OMEGA
$SIGMA
Variance-covariance
SHK additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
SHM additional_output_files
$ESTIMATION,$ESTM
ETASXI
NONMEM output files
short-hand $ABBREVIATED
shrinkage additional_output_files
$ESTIMATION,$ESTM
ETASXI
SHRINKAGE
sid $LEVEL
sig parallel computing
SIGMA_STD_PRIORU $svarf
sigmoid_emax Enterhepatic circulation examples
PK_PD_sequential_1 example
PK_PD_sequential_2 example
PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
signal, sig nmfe utility program
Significant_Digits_from_Est._Step Significant Digits from Est. Step
significant_digits, sig_digits $ESTIMATION,$ESTM
MONITORING OF SEARCH
significant_figures, sig_figures MONITORING OF SEARCH
SIML NONMEM control stream
siml $SIMULATION
SIML_STEP TOL
simulated Correlation Across L2 Records
simulated_value Displayed PRED-Defined Items
Plasma urine example
Simulation_1 example
Simulation_2 example
Simulation_3 example
Simulation: ETA,EPS
simulation Correlation Across L2 Records
NWPRI examples
$PRIOR
simulation_record NONMEM control stream
simulation, simulate $ERROR
Nonparametric example
$PK
$PRED
PRED Exit Code
Simulation block
SUPP
simulation_step NONMEM steps
simultaneous_pk_pd PK_PD_simultaneous_1 example
PK_PD_simultaneous_2 example
PK_PD_simultaneous_3 example
PK_PD_simultaneous_4 example
sine, cosine Abbreviated code
single_node parallel computing
single-precision $SUBROUTINES
single-subject Control3 example
Correlation Across L2 Records
ID .ID. and L1 data items
INDIVIDUALS
Population single-Subject Indicator
RECORDS=ID Example 2
single_system Moving Area Under the Curve Example
singular NONMEM error messages
sinusoidal Examples Using MTIME to Model Periodic D
sizes $ABBREVIATED
SIZES nmfe utility program
SKEWNORMAL Probability Density Functions
slkjdf $svarf
SMAT Model Specification file
_SMAT Model Specification file
s_matrix $COVARIANCE,$COVR
COVARIANCE MATRIX OF ESTIMATE
Variance-covariance
smooth_step Enterhepatic circulation examples
smpd.exe parallel computing
SMT additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
sobol $ESTIMATION,$ESTM
$TABLE
SORC NONMEM control stream
sort $TABLE
source RANDMT,RANDMTU
RANDOM
SIMEPS
SIMETA
$SIMULATION
source_record NONMEM control stream
space $DATA
special_computation $COVARIANCE,$COVR
Recursive PRED Indicator
special_data_item PRED_RES_WRES
sptwo ELS
square_root Abbreviated code
CHOL
ss ADDL data item
Enterhepatic circulation examples
Transit Compartment Examples
SS_dose_event ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Empirical SS dose event record
Initial Steady State: I_SS,ISSMOD
SS dose event record
ssh parallel computing
ss_routine Initial Steady State example
SS6 SS9
SS option
standard_error $COVARIANCE,$COVR
INFERENTIAL STATISTICS
standard_error_of_estimate CORRELATION MATRIX OF ESTIMATE
Standard Errors
STANDARD ERROR OF ESTIMATE
SUPP
Standard_errors Standard Errors
startseed RANDMT,RANDMTU
state_time Dose event record
state_vector State Vector: A
State Vector Time: TSTATE
static_allocation, static_array nmfe utility program
$SIZES
statistics, inferential INFERENTIAL STATISTICS
stdssp $ovarf
$svarf
steady-state ADDL data item
steady_state ADDL data item
steady-state ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
ADVAN9_15
Dose event record
Empirical SS dose event record
steady_state Empirical SS dose event record
steady-state Enterhepatic circulation examples
Exogenous supplementation example
Initial Steady State example
Initial Steady State: I_SS,ISSMOD
Interoccasion_variability example
steady_state MODEL
PK
PREDPP modules
steady-state SS6 SS9
SS data item
SS dose event record
SS option
Transit Compartment Examples
step_circexa.ctl Examples Using MTIME to Model Periodic D
step, step-function Examples Using MTIME to Model Periodic D
stiff ADVAN6 ADVAN8 ADVAN13 ADVAN14 A
stochastic_differential_equations SDE
Stochastic Differential Equation examples
storage nmfe utility program
$SIZES
STP MONITORING OF SEARCH
STRC NONMEM control stream
structure_record NONMEM control stream
stub Abbreviated Function
CCONTR
CONTR
CRIT
INFN
$MIX
MIX
PRIOR
SPTWO
Stubs
STUDENTT Probability Density Functions
subject parallel computing
subject-specific Displayed PRED-Defined Items
GETETA
INFN
PASS
TRANS (subroutine)
submodel, subpopulation Mixture model: MIXNUM,MIXEST
Mixture model: MIXP
PRED_RES_WRES
subproblem additional_output_files
Initialization-Finalization block
raw_output_file
Simulation block
SKIP
subroutine_option Abbreviated Function
Abbreviated Function Examples
BIVARIATE FUNCTION
SUBROUTINE
subroutines ADVAN (general)
SS6 SS9
SS option
Stubs
subscript $ABBREVIATED
Write print
subscript, subscripted Abbreviated code
DOWHILE block
Infn_interpolation example 2
Transit Compartment Examples
sudo parallel computing
super-id $LEVEL
superimpose, superimposition SS data item
SS dose event record
superimposition, superposition Transit Compartment Examples
superproblem additional_output_files
Initialization-Finalization block
Problem Iteration Counters
raw_output_file
SKIP
$SUPER
Superproblem_1 example
Superproblem_2 example
super_problem_record NONMEM control stream
supervisor_of_steady_state SS option
support $NONPARAMETRIC
support_point $NONPARAMETRIC
support, support_utility nmfe utility program
parallel computing
suppress SUPP
SUPR NONMEM control stream
synonym DATA_ITEMS
$INPUT
PRED_RES_WRES
$SCATTERPLOT
$TABLE
synthesis PK_PD_simultaneous_4 example
t COVARIANCE MATRIX OF ESTIMATE
t24 Examples Using MTIME to Model Periodic D
tab $DATA
tab_character $DATA
TABL NONMEM file control stream
NONMEM control stream
table additional_output_files
FINEDATA
NMTEMPLATE
PRED,RES,WRES
raw_output_file
TABLE_COMPARE
TABLE_QUANT
TABLE_RESAMPLE
XML_COMPARE
table_file $DATA
Phenobarb example
Simulation_1 example
Simulation_2 example
$TABLE
table_quant $COVARIANCE,$COVR
table_record NONMEM control stream
NONMEM file control stream
table_resample $COVARIANCE,$COVR
TABLE_STEP TOL
table_step NONMEM steps
tad, time_after_dose Time After Dose (TAD) Example
tag NONMEM output files
task_specification_record NONMEM control stream
#TBLN NONMEM output files
TBLN NONMEM output files
tcrit HINIT_,HMIN_,HMAX_ (NM760)
STOP_TIME,ITASK_ (NM75)
t-distribution MU_Model
$TTDF (NM75)
tdm TDM example
tdy Moving Area Under the Curve Example
temp_dir nmfe utility program
template $DATA
Data_Average block
Data_average example
MIX CONTR: TEMPLT
Mixture model: MIXPT
$OMIT
REPL_ data item (NM75)
$SIMULATION
templt $MIX
MIX
#TERE additional_output_files
TERE additional_output_files
#TERE NONMEM output files
TERE NONMEM output files
#TERM additional_output_files
TERM additional_output_files
#TERM NONMEM output files
TERM NONMEM output files
tfi, tfd Abbreviated code
THCN NONMEM control stream
theophylline Control3 example
Control4 example
Control5 example
Control6 example
Control7 example
Finedata example
Infn_interpolation example 1
Infn_interpolation example 2
theopp Finedata example
Infn_interpolation example 1
Infn_interpolation example 2
theta $TTDF (NM75)
theta_constraint_record NONMEM control stream
theta_record NONMEM control stream
theta_recovery $ESTIMATION,$ESTM
Interoccasion_variability example
three_compartment_linear_model ADVAN11
ADVAN12
Three_compartment example
THTA NONMEM control stream
time $DATA
timeout parallel computing
timeouti parallel computing
time_scale $PK
PK
Time scale parameter
time_translation DATE data item
TIME data item
time-varying_wt INTERPOLATION IN $DES
tip3 Time After Dose (TAD) Example
tip4 Time After Dose (TAD) Example
tips Time After Dose (TAD) Example
t_matrix COVARIANCE MATRIX OF ESTIMATE
tol NONMEM error messages
tolerance PK_PD_simultaneous_2 example
XML_COMPARE
TOSU, TSOL additional_output_files
raw_output_file
TRANSFER_TYPE parallel computing
transfer_type parallel computing
transgeneration, transgenerate Abbreviated code
Finalization example ($PRED and $INFN)
INFN
Infn_interpolation example 1
Infn_interpolation example 2
Initialization-Finalization block
PASS
PASS: PASSRC
$SIMULATION
Simulation_3 example
Simulation block
Verbatim code
transit Transit Compartment Examples
translation, time-translation $DATA
translator, translation $PK
PK
TRANS (option)
TRANS (subroutine)
two_compartment_linear_model ADVAN3
ADVAN4
two-stage Superproblem_2 example
typical_value Displayed PRED-Defined Items
Simulation_1 example
ucp $ESTIMATION,$ESTM
$MSFI
Order_option
UCP MONITORING OF SEARCH
unconstrained INITIAL ESTIMATE (INITIAL EST)
Interoccasion_variability example
MONITORING OF SEARCH
$OMEGA
$SIGMA
$THETA
unconstrained_etas INDIVIDUALS
unconstrained_parameter MONITORING OF SEARCH
unit FILES
unit_slope_line $SCATTERPLOT
univariate Correlation Across L2 Records
unix parallel computing
update Compartment Update Block (NM75)
upper_bound_record NONMEM control stream
upper_case Abbreviated code
$INPUT
nmfe utility program
variables in modules
Verbatim code
upper-triangular MONITORING OF SEARCH
UPPR NONMEM control stream
up, upper, upper_bound INITIAL ESTIMATE (INITIAL EST)
MONITORING OF SEARCH
$THETA
urine CMT PCMT data item
Output fraction parameter
Plasma urine example
Scaling parameter
useful_variables Abbreviated code
user_function User-defined Reserved Function Example
user-installation_routine FLU
user_message Abbreviated code
PRED Error Message
users_guide USERS GUIDE
user_supplied_routine CCONTR
CONTR
CRIT
INFN
$MIX
MIX
NONMEM modules
PREDPP modules
PRIOR
SPTWO
Stubs
variables in modules
utility_routine Abbreviated Function
Abbreviated Function Examples
CELS
CHOL
CONSTRAINT
CSVALIGN
DDEXPAND
DOEXPAND
ELS
FILES
FINEDATA
Finedata example
FLU
GAMLN
GETETA
LBLR
LPCC
MULT
NCONTR
NEFF,NEFFI
nmfe utility program
NMTEMPLATE
NWPRI
PASS
PHI
priorget
Probability Density Functions
RANDMT,RANDMTU
RANDOM
SIGNAL
SIMEPS
SIMETA
SUMMARY
SUPP
TABLE_COMPARE
TABLE_QUANT
TABLE_RESAMPLE
TABLE_TO_XML
TNPRI
XML_COMPARE
values $DES
Displayed PRED-Defined Items
Simulation_1 example
Simulation_2 example
var-cov NONMEM error messages
Variance-covariance
variability COVARIANCE MATRIX OF ESTIMATE
Interoccasion_variability example
Intra and inter-individual
Random models
variables Copying block
$DES
Displayed PRED-Defined Items
Indicator variables
Simulation_1 example
Simulation_2 example
variables_in_modules variables in modules
variance-covariance additional_output_files
CORRELATION MATRIX OF ESTIMATE
COVARIANCE MATRIX OF ESTIMATE
INFERENTIAL STATISTICS
$OMEGA
Order_option
raw_output_file
$SIGMA
SIMEPS
SIMETA
STANDARD ERROR OF ESTIMATE
Variance-covariance
vector $ABBREVIATED
Abbreviated code
Abbreviated Function
Abbreviated Function Examples
Transit Compartment Examples
verbatim Abbreviated code
Displayed PRED-Defined Items
RANDOM
SIMEPS
SIMETA
variables in modules
Verbatim code
volume_of_disribution INTERPOLATION IN $DES
VON Probability Density Functions
VPD additional_output_files
$ESTIMATION,$ESTM
NONMEM output files
VPD $TABLE
VPT $ESTIMATION,$ESTM
NONMEM output files
VPT $TABLE
w parallel computing
w: parallel computing
warfarin PK_PD_simultaneous_4 example
WEIBULL Probability Density Functions
weighted-residual, weight PRED,RES,WRES
PRED_RES_WRES
windows parallel computing
worker parallel computing
wres SPTWO
WSLEEP parallel computing
wt INTERPOLATION IN $DES
WTOUCH parallel computing
XML additional_output_files
TABLE_TO_XML
XML_COMPARE
xml TABLE_TO_XML
xml XML_COMPARE
XSD additional_output_files
TABLE_TO_XML
xsd TABLE_TO_XML
XTL TABLE_COMPARE
XML_COMPARE
xtl TABLE_COMPARE
xtl XML_COMPARE
XVID NONMEM control stream
ZERO NONMEM control stream
zero_line, zero CONTR
$SCATTERPLOT
SPTWO
zero_record NONMEM control stream